Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTKIAFVFPGQGAQKVGMGQDVAAEYPEAKKIYDDADERLGFSITEIITEGPIELLTKSENAQPALVSTSVAILRAL--ETYGVKADYVAGHSLGEYSALVAGGFLEASDAIYLVRKRGELMEAAVP-NGAGAMAAVLGVDRETLKTITEEVTKEGDAVQLANLNCPGQIVISGTTAGVEKAGEKAKESGAKRVLPLAVSGPFHSSLMEPAALAFRDVLAEVKISDGQIPVVNNVDAKETTDKSEISDKLIKQIYSPVLWEDIVEELIKNGVDTFVEIGSGKVLAGLIKKINRDVTVLSAGDAESVKSVAATLKGE |
1NM2 Chain:A ((1-310)) | -HMLVLVAPGQGAQTPGFLTDWLAL-PGAADRVAAWSDAIGLDLAHFGTKADADEIRDTSVAQPLLVAAGILSAAALGT---GFTPGAVAGHSVGEITAAVFAGVLDDTAALSLVRRRGLAMAEAAAVT-ETGMSALLGGDPEVSVAHLE-----RLGLTPANVNGAGQIVAAGTMEQLAALNEDKPEGVR-KVVPLKVAGAFHTRHMAPAVDKLAEAAKALTPADPKVTYVSNKDGRAVASGTEVLDRLVGQVANPVRWDLCMETFKELGVTAIIEVCPGGTLTGLAKRALPGVKTLALKTPDDLDAAREL---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1NM2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -152924 for 2748 contacts (-55.6/contact) +
2D Compatibility (PS) -32347 + (NN) -13319 + (LL) 1128
1D Compatibility (HY) -12000 + (ID) 4550
Total energy: -214012.0 ( -77.88 by residue)
QMean score : 0.571
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