Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQKQVVVMDEAAIKRALTRVSYEIIERNKGTKNLALVGIKTRGIYLAERLHKRILEIEGIDVPVGDIDITLYRDDLSFKDDKTREPAVHGTNIPFDINGKKVVLVDDVLYTGRTVRAAMDALMDVGRPAQIHLAVLADRGHRELPIRADYVGKNIPTSGNERVEVRLTDVDHAEDAVIINKNE
4P86 Chain:D ((4-181))
--QKAVILDEQAIRRALTRIAHEMIERNKGMNNCILVGIKTRGIYLAKRLAERIEQIEGNPVTVGEIDITLYRDDLS-----NDEPLVKGADIPVDITDQKVILVDDVLYTGRTVRAGMDALVDVGRPSSIQLAVLVDRGHRELPIRADYIGKNIPTSKSEKVMVQLDEVDQ-NDLVAIYEN-
General information:
TITO was launched using:
RESULT:
Template:
4P86.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -112242 for 1367 contacts (-82.1/contact) +
2D Compatibility (PS) -19293 + (NN) -6863 + (LL) 684
1D Compatibility (HY) -20400 + (ID) 5950
Total energy: -164064.0 ( -120.02 by residue)
QMean score : 0.617
(partial model without unconserved sides chains):
PDB file :
Tito_4P86.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4P86-query.scw
PDB file :
Tito_Scwrl_4P86.pdb
: