Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSEQVRVLVVDDEDRIRRLLKMYLERENYRIEEASDGDQALSMALNNNY-EVILLDLMMPGKDGIEVCRELREFKST---PVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRAKQSSEESAGGTPGDIITFPHLKIDNEAHRVIVDGKEIGLTPKEYDLLYYLAKSPDKVFDRESLLKEVWRYEFFGDLRTIDTHVKRLREKLHDVSEDAARMIVTVWGLGYKFEVPED
2JBA Chain:B ((4-122))
-----RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQ-LNEPWPDLILLAWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMRR---------------------------------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2JBA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82202 for 842 contacts (-97.6/contact) +
2D Compatibility (PS) -12529 + (NN) -5418 + (LL) 8372
1D Compatibility (HY) -13200 + (ID) 2900
Total energy: -107877.0 ( -128.12 by residue)
QMean score : 0.558
(partial model without unconserved sides chains):
PDB file :
Tito_2JBA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JBA-query.scw
PDB file :
Tito_Scwrl_2JBA.pdb
: