Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKVIVACGSGVATSQTVASKVERILKEKGVRATVEAVDIKSLE--QHIKTSDVYVAITKANKEFDIPTLNGIAFLTGMGMDEETEKLLNALK
3F6R Chain:A ((2-60))
-SKVLIVFGSSTGNTESIAQKLEELIAAGGHE--VTLLNAADASAENLADGYDAVLFGCSAW-------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3F6R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28010 for 356 contacts (-78.7/contact) +
2D Compatibility (PS) -6425 + (NN) -2099 + (LL) 2456
1D Compatibility (HY) -2000 + (ID) 550
Total energy: -36628.0 ( -102.89 by residue)
QMean score : 0.622
(partial model without unconserved sides chains):
PDB file :
Tito_3F6R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3F6R-query.scw
PDB file :
Tito_Scwrl_3F6R.pdb
: