Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKIPFIIQYVKSTLGPTAIF--EGRKVLKFWQMVIVFIFLNALLLLPVSAHFANQSSFDLPSLMPKMATLGTDQLASKISGL-------TLENGALTDKNAHIVEKTVNGVA-----GVNLTKAELSGAKNVINFKD----QEMTLTDA--SGYNFEVSYPKDATLSEITSGESLVDWVSAQWYLENQAFVFLS---MVLMIG-------SIIFVSSLMLTVFTTLFIWMTKRSSFSSIASFKE-------SVNLTLNAL--GIPVIAACIIGFIYFDITIIMAVQSLGMV--------LMIAWTFLKTRFY--KTSEKSMAASR |
| 4LDV Chain:A ((16-356)) | --SDALCRELWHACAGPLVTLPREGERVYYFPEGHMEQLEASMHQGLEQQMPSFNLPSKILCKVINIQRRAETDEVYAQITLLPELDQSEPTSPDAPVQETVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHNSEWHFRHIFRGQPRRHLLTTG--WSVFVSSKKLVAGDAFIFLRGENEELRVGVRRHMPSSVISSHSMHIGVLATAAHAITTGTIFSVFYKPRTSRSEFIVSVNRYLEAKTQKLSVGMRFKMRFKRFSGTIVGVQENKSSVWHDSEWRSLKVQWDEPSSVFRPERVSPWELEPLN |
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General information:
TITO was launched using:
| RESULT:
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Template: 4LDV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -147920 for 1782 contacts (-83.0/contact) +
2D Compatibility (PS) -27992 + (NN) 5844 + (LL) 348
1D Compatibility (HY) -3200 + (ID) 2900
Total energy: -175820.0 ( -98.66 by residue)
QMean score : 0.134
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