Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MRKMAVISLVLLLFLVGCGKEEAAQKPEQKTDKEPKIVATTVAITEIMDKLDLPLVGIPSSSKKLPKRYADVKETGSPMGPDLEIIRMLKPDMVLSTKTLE-ADLKSGFEGADLEADFLDFTSIASMQTEIKNLGAKFDRIEEATKLNKDLTSDIDQVKSNVAKKKKPTVLILMGVPGSYLVVTEHAYIGDLVKLAGGENVIKDQKVEYLASNTEYLQSANPDIILRAAHGMPAEVVKMFDEEFKTNDIWKHFDAVKNNRVYDLDENLFGMTASLNAPEALKEMEKMLYDN |
1N2Z Chain:A ((1-244)) | --------------------------------AAPRVITLSPANTELAFAAGITPVGVSSYSD-YPPQAQKIEQVSTWQGMNLERIVALKPDLVIAWRGGNAERQVDQLASLGIKVMWVDATSIEQIANALRQLAPWSPQPDKAEQAAQSLLDQYAQLKAQYADKPKKRVFLQFGIN-PPFTSGKESIQNQVLEVCGGENIFKDSRVPWPQVSREQVLARSPQAIVITGGPDQ-------IPKI--KQYWGEQ---LKIPVIPLTSD-WFERASPRIILAAQQLCNALSQV |
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General information:
TITO was launched using:
| RESULT:
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Template: 1N2Z.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -89880 for 1990 contacts (-45.2/contact) +
2D Compatibility (PS) -26244 + (NN) -12950 + (LL) 4548
1D Compatibility (HY) -8800 + (ID) 2450
Total energy: -135776.0 ( -68.23 by residue)
QMean score : 0.443
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