Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKVFITTGTEHYLRQLMANYTGGNVTLLQNFSQSLLYQESTGEKLFQEGAEYRVLQSSGSIKGFGVVVFEYIHLR-DEEIPIFLQMYQRASLH-FSETPGLQSTKLTKAMNMNKFLIISFWDSEVFFHDWK----KSPLSKEITNIMRKNNTQSGFSHEDIYHYPEFSHDAK
1LQ9 Chain:A ((7-91))
---------------------------------------------------------------RVGFVAVVTFPVDGPATQHKLVELATGGVQEWIREVPGFLSATYHASTDGTAVVNYAQWESEQAYRVNFGADPRSAELREALSSL-------------------------
General information:
TITO was launched using:
RESULT:
Template:
1LQ9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36196 for 489 contacts (-74.0/contact) +
2D Compatibility (PS) -8667 + (NN) -2702 + (LL) 5300
1D Compatibility (HY) -800 + (ID) 550
Total energy: -43615.0 ( -89.19 by residue)
QMean score : 0.346
(partial model without unconserved sides chains):
PDB file :
Tito_1LQ9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LQ9-query.scw
PDB file :
Tito_Scwrl_1LQ9.pdb
: