Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKAVGLTKASTDFV-DIEIDKPVPENHDLLVKIKAISINPVDTKQREAAKL--------SGEEVRILGWDAVGEVVDTGSEVTLFQTGQDVYFAGDV------------------------TRPGVYAEYTLIDERLVGLKPHNLNVEEAAAMPLTTITAWEALFDRLTITENDKGKSILIINGAGGVGSIATQLAANTG-LEVIATASRSETVEWTKSHGANYVINHREN-IPEQLEELG-FKKGVDFILCLHNTS-AHWDEMQEAIRPQGKICSIVELTEPVEMTLLKDKSATFSYEFMFTRSKYDTADKIRQHEILTEAAHMLDKGNLTTTLNQVLSPVNAATIEEAHKIISSGKMIGKLVVKGFE |
| 1JVB Chain:A ((1-347)) | MRAVRLVEIGKPLSLQE-IGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLGINFDGAYAEYVIVPHYKYMYKLRRLNAVEAAPLTCSGITTYRAVR-KASLD---PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESK-GVDAVIDL-NNSEKTLSVYPKALAKQGKYVMVGLFGADLHY---HAPLITLSEIQFV-------GSLVGNQSDFLGIMRLAEAGKVKPMITKTM-KL--EEANEAIDNLENFKAIGRQVLIP-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1JVB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -170958 for 2754 contacts (-62.1/contact) +
2D Compatibility (PS) -32229 + (NN) 2755 + (LL) 1016
1D Compatibility (HY) -14400 + (ID) 3650
Total energy: -217466.0 ( -78.96 by residue)
QMean score : 0.490
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