Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VITKIDKNKVRKKRHARVRSKISGTESRPRLNVFRSNKNIYAQIID--DVNGVTLASASNLDKDFGS---AESKVDAASKVGELVAKRASEKGITSVTFDRGGYL--YHGRVKALAEAARENGLEF
1VQ8 Chain:N ((29-130))
------------------------KSGKPRLVARKSNKHVRAQLVTLGPNGDDTLASAHSSDLAEYGWEAPTGNMPSAYLTGLLAGLRAQEAGVEEAVLDIGLNSPTPGSKVFAIQEGAIDAGLDI
General information:
TITO was launched using:
RESULT:
Template:
1VQ8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -11869 for 731 contacts (-16.2/contact) +
2D Compatibility (PS) -10489 + (NN) -5931 + (LL) 1828
1D Compatibility (HY) 0 + (ID) 1450
Total energy: -27911.0 ( -38.18 by residue)
QMean score : 0.491
(partial model without unconserved sides chains):
PDB file :
Tito_1VQ8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VQ8-query.scw
PDB file :
Tito_Scwrl_1VQ8.pdb
: