Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDLVQFLKKGMVWVQSDIEKQEDLFQMVAESGKSEGYVTDDFLTRLTDREQTFPTGL-KLDGYGVALPHTDPECVTEQFIAVITVKDGIPFKLMEDAGQTVEANLIFVLGLNEPHSQLAVLQQLMGTIQDKDNVAALLRAKDEDEVKQILETIAV
3T43 Chain:A ((3-135))
-------------------SQNDIIKALASPLINDGMVVSDFADHVITREQNAPTGLPVE-PVGVAIPHTDSKYVRQNAISVGILAEPVNFEDAGGEPDPVPVRVVFMLALGNWFDITNVLWWIMDVIQDADFMQQLLVMNDD-EIYQSIYTRI-
General information:
TITO was launched using:
RESULT:
Template:
3T43.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -80736 for 968 contacts (-83.4/contact) +
2D Compatibility (PS) -14315 + (NN) -5585 + (LL) 1996
1D Compatibility (HY) -9600 + (ID) 2100
Total energy: -110340.0 ( -113.99 by residue)
QMean score : 0.587
(partial model without unconserved sides chains):
PDB file :
Tito_3T43.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3T43-query.scw
PDB file :
Tito_Scwrl_3T43.pdb
: