Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MERAFFMQQALEEAEKARDIG-EVPIGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQDACKHQNSWRLSGAELYVTLEPCPMCSGAILLSRIEKVYYGAKDPKAGTAGSLMNLLQDDRFNHTCEVEAGLMESESSEMLKSFFQELRKRNKSNRS
1WKQ Chain:B ((10-124))
-NHETFLKRAVTLACEGVNAGIGGPFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKVLGAYQLDDCILYTSCEPCPMCLGAIYWARPKAVFYAAEHTDAAEAGF------DDSF-----------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1WKQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -51661 for 957 contacts (-54.0/contact) +
2D Compatibility (PS) -12588 + (NN) -6728 + (LL) 3336
1D Compatibility (HY) -7200 + (ID) 2300
Total energy: -77141.0 ( -80.61 by residue)
QMean score : 0.470
(partial model without unconserved sides chains):
PDB file :
Tito_1WKQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1WKQ-query.scw
PDB file :
Tito_Scwrl_1WKQ.pdb
: