Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRNELEDKILAILEQHQVGVLTSVQG-DYPHARYMTFLH-DGLTLYTPSGKELPKTDEVRRNPHVSVLIGYESP-GSAFLEINGLASLEEDESIKERIWE-NISKEWFRGEDSPSFVVIKIVPEQIRILNSDDDGPDTLDLIG
2HHZ Chain:A ((3-142))
----ELKDIMHILEDMKVGVFATLDEYGNPHARHAHITAANEEGIFFMTSPETHFYDQLMGDQRVAMTAISEEGYLIQVVRVEGTARPVENDYLKTVFADNPYYQHIYK-----TMQVFQIYAGHGFYHSLTQGHKYIF----
General information:
TITO was launched using:
RESULT:
Template:
2HHZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -52803 for 893 contacts (-59.1/contact) +
2D Compatibility (PS) -13584 + (NN) -3293 + (LL) 152
1D Compatibility (HY) -5200 + (ID) 1050
Total energy: -75778.0 ( -84.86 by residue)
QMean score : 0.335
(partial model without unconserved sides chains):
PDB file :
Tito_2HHZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2HHZ-query.scw
PDB file :
Tito_Scwrl_2HHZ.pdb
: