Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VILIIDHNDSFTYNLYQYFLELQEEVQVVSATSFSLEAFQQLAPEMVVLSPGPGSPEDFPVSLALLGK--I-QVPILGICLGHQIIGHFFGAKVVPANVPVHGKTSVISH-TGEGLFADLEP--------AFQVTRYHSLVIDPTTVPVNLKVTAVTEDGVIMGLVHATKPIHSVQFHPEAILSENGHAILKNFV-RLGRNVK
3TQI Chain:A ((9-244))
RILILDFGSQYAQLIARRVREIGVYCELMPCDI-DEETIRDFNPHGIILSGGPE----------APAFIFEIGCPVLGICYGMQTMAYQLGGKVN-----EFGHA-QLRVLNPAFLFDGIEDQVSPQGEPLLDVWMSHGDIVS--ELPPGFEATACTDNSPLAAMADFKRRFFGLQFHPEVTHTPQGHRILAHFVIHICQ---
General information:
TITO was launched using:
RESULT:
Template:
3TQI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -158972 for 1424 contacts (-111.6/contact) +
2D Compatibility (PS) -17618 + (NN) -1050 + (LL) 504
1D Compatibility (HY) -8800 + (ID) 2100
Total energy: -188036.0 ( -132.05 by residue)
QMean score : 0.521
(partial model without unconserved sides chains):
PDB file :
Tito_3TQI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TQI-query.scw
PDB file :
Tito_Scwrl_3TQI.pdb
: