Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVKMIVGLGNPGSKYNDTKHNIGFMAVDRIVKDLDVNFTEDKNFKAEIGSDFINGEKIYFIKPTTFMNNSGIAVKALLTYYNISIKDMIIIYDDLDMEVGKIRFRQKGSAGGHNGIKSIIAHLGTQ-EFDRIKVGIGRPNGRMTVINHVLGKFDKNDEIMILNTLDKVDNAVNYYLQTNDFQKTMQKYNGLK
4DJJ Chain:B ((4-193))
-VQLIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGFFRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQLGNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQELLDTSIDFALGVLPEML-AGDWTRAMQKLHSQK
General information:
TITO was launched using:
RESULT:
Template:
4DJJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -103946 for 1526 contacts (-68.1/contact) +
2D Compatibility (PS) -19727 + (NN) -5126 + (LL) 328
1D Compatibility (HY) -10800 + (ID) 3250
Total energy: -142521.0 ( -93.40 by residue)
QMean score : 0.535
(partial model without unconserved sides chains):
PDB file :
Tito_4DJJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DJJ-query.scw
PDB file :
Tito_Scwrl_4DJJ.pdb
: