Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSIKKSVIGFCLGAAALSMFACVDSSQSVMAAEKDKVEITWWAFPTFTQEKAKDGVGTYEKKVIKAFEKKNPNIKVKLETIDFTSGPEKITTAIEAGTAPDVLFD-APGRIIQYGKNGKLADLNDLFTDQFIKDVNNKNIIQASKSGDKAYMYPISSAPFYMAFNKKMLKDAGVLKLVKEGWTTSDFEKVLKALKNKGYTPGSFFANGQGGDQGPRAFFANLYSAP-ITDKE------VTKYTTDTKNSVKSMKKIVEWIKKGYLMNGSQYDGSADIQNFANGQTAFTILWAPAQPKTQAKLLESSKVDYLEVPFPSEDGKP-DLEYLVNGFAVFNNKDENKVKASKKFITFIADDKKWGPKDVIRTGAFPVRTSFGDLYKGDKRMMKISKWTQYYSPYYNTIDGFSEMRTLWFPMVQSVSNGD-EKPADALKDFTQKANDTIKKAAK |
| 2GH9 Chain:A ((2-379)) | -------------------------------------KITVWTHFGGP-------ELEWLKEQARTFER-TSGTKVEVVEVPFAEIKQKFILGAPQGQAADLVVTVPHDWVGEMAQAGVLEPVGKYVTQAYLADLQGVAVEAF-TFGGRLMGLPAFAESVALIYNKKYVKE------PPR--TWEEFLALAQKLTTGAT-FGFLYNIG--DPYFNFGFF-KAFGAENVFAKDAKGNLDPTKLLIGGEVGEKALQFIKDLRFKYNLVPEG-VDYGVADGAFKDGALAMILNGPWALGDYKKA---KVDFGIAPFPVPPGAKNPWGPFLGVQGVVVNAY--SKNKTQAVNFAKTLVTGRNL-VAFNQAGGRIPVSKSAVKQLEKDPVVAGFSKVFP-LGAPMPNIPEMGKVWGPWGNAISLAIQRPDSNVKKIVEDMVAEIKKAIG---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2GH9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -70163 for 3222 contacts (-21.8/contact) +
2D Compatibility (PS) -38792 + (NN) -9751 + (LL) 5100
1D Compatibility (HY) -14000 + (ID) 3050
Total energy: -130656.0 ( -40.55 by residue)
QMean score : 0.422
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