Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTKGILGKKVGMTQIFTESG----------EFIPVTVIEATPNVVLQVKTVETDGYEAVQVGFDDKR------EVLSNKPAK-------GH---------VAK----ANTAP---------KRFIREFKNIEG------------LEVGAELSV-EQFEAGDVVDVTGTSKGKGFQGVIKRHGQSRGPMAHGS-RYHRRPGSMGPVAPNRVFKNKRLAGRMGGNRVTVQNLEIVQVIP----------------EKNVVLIKGNVPGAKKSLITIKSAVKAAK |
1VQ8 Chain:B ((39-320)) | -VQGFAGYKAGMTHVVLVNDEPNSPREGMEETVPVTVIETPPMRAVALRAYEDTPYGQRPLTEVWTDEFHSELDRTLDVPEDHDPDAAEEQIRDAHEAGDLGDLRLITHTVPDAVPSVPKKKPDVMETRVGGGSVSDRLDHALDIVEDGGEHAMNDIFRAGEYADVAGVTKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDIGEGDEPTVDGGFVNYGEVDGPYTLVKGSVPGPDKRLVRFRPAVRPND |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VQ8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -11548 for 1297 contacts (-8.9/contact) +
2D Compatibility (PS) -21952 + (NN) -2481 + (LL) 208
1D Compatibility (HY) -4000 + (ID) 3150
Total energy: -42923.0 ( -33.09 by residue)
QMean score : 0.399
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