Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIQQETRLKVADNSGAREILTIKVLGGSG----RKFANIGDVIVASVKQATPGGAVKKGDVVKAVIVRTKTGARRPDGSYIKFDDNAAVIIRDDKTPRGTRIFGPVARELREGGYMKIVSLAPEVL
1VQ8 Chain:K ((11-132))
GLEKGSLITCADNTGARELKVISVHGYSGTKNRLPKAGLGDKITVSVTKGTPEM---RRQVLEAVVVRQRKPIRRPDGTRVKFEDNAAVIVDENEDPRGTELKGPIAREVAQ-RFGSVASAATMIV
General information:
TITO was launched using:
RESULT:
Template:
1VQ8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60976 for 918 contacts (-66.4/contact) +
2D Compatibility (PS) -12672 + (NN) -4466 + (LL) 228
1D Compatibility (HY) -6000 + (ID) 2450
Total energy: -86336.0 ( -94.05 by residue)
QMean score : 0.611
(partial model without unconserved sides chains):
PDB file :
Tito_1VQ8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VQ8-query.scw
PDB file :
Tito_Scwrl_1VQ8.pdb
: