Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTTYFDNFLKTNQAYADLHGTAHLPIKPKTKVAIVTCMDSRLHVAQALGLDLGDAHILRNAGGRVTDDVLRSLVISQQQLGTREIVVLHHTDCGAQTFTNEAFATQLQRDLGVDMHGHDFLP--FNDIEESVREDVAKLHASPLIPNDVVISGAIYDVDTGRMVEVK
1YLK Chain:C ((11-170))
--TVTDDYLANNVDYASGF-KGPLPMPPSKHIAIVACMDARLDVYRMLGIKEGEAHVIRNAGCVVTDDVIRSLAISQRLLGTREIILLHHTDCGMLTFTDDDFKRAIQDETGIR---PTWSPESYPDAVEDVRQSLRRIEVNPFVTKHTSLRGFVFDVATGKLNEVT
General information:
TITO was launched using:
RESULT:
Template:
1YLK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -78410 for 1070 contacts (-73.3/contact) +
2D Compatibility (PS) -17088 + (NN) -10888 + (LL) 168
1D Compatibility (HY) -14000 + (ID) 3500
Total energy: -123718.0 ( -115.62 by residue)
QMean score : 0.600
(partial model without unconserved sides chains):
PDB file :
Tito_1YLK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YLK-query.scw
PDB file :
Tito_Scwrl_1YLK.pdb
: