Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTVKINTRDGQIELSDDVIATVVGGSATEIFGVVGMASKSAIKDNFQALLRKENYAKGVVVRSSEAGIAVDVYTVMSYGVKISEVSKNIQERVKFNLENQLGLSADMVNVYVQSIKVVGED
2NLL Chain:B ((1-78))
----------------DELCVVCGDKATGYHY--RCITCEGCKGFFRRTIQKNLHPSYSCKYEGK--------------CVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAKRKLI
General information:
TITO was launched using:
RESULT:
Template:
2NLL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1013 for 544 contacts (-1.9/contact) +
2D Compatibility (PS) -8128 + (NN) 520 + (LL) 2492
1D Compatibility (HY) -3600 + (ID) 750
Total energy: -10479.0 ( -19.26 by residue)
QMean score : 0.370
(partial model without unconserved sides chains):
PDB file :
Tito_2NLL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2NLL-query.scw
PDB file :
Tito_Scwrl_2NLL.pdb
: