Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNTLIVNSHPDFSNPYSFTTILQEKFIELYNEHFPNHQLSILNLYDC--VLPEITKEVL----L-SIWSKQRKGLELTADEIVQAKISKDLLEQFKSHHRIVFVSPMHNYNVTARAKTYIDNIFIAGETFKYTENGSVGLMTDDYRLLMLESAGSIYSKGQYSPYEFPVHYLKAIFKDFMAFDDFCVVRAEGTDIL--DRQVVLDKMNQDLREAFEAFYSKE
2HPV Chain:A ((2-208))
-SKLLVVKAHPLTKEESRSVRALETFLASYRETNPSDEIEILDVYAPETNMPEIDEELLSAWGALRAGAAFE---TLSENQQQKVARFNELTDQFLSADKVVIANPMWNLNVPTRLKAWVDTINVAGKTFQYTAEGPKPLTS-GKKALHIQSNGGFYE-G----KDFASQYIKAILN-FIGVDQVDGLFIEGIDHFPDRAEELLNTAMTKATEYGKTF----
General information:
TITO was launched using:
RESULT:
Template:
2HPV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -123483 for 1505 contacts (-82.0/contact) +
2D Compatibility (PS) -21536 + (NN) -10959 + (LL) 464
1D Compatibility (HY) -7600 + (ID) 2850
Total energy: -165964.0 ( -110.28 by residue)
QMean score : 0.516
(partial model without unconserved sides chains):
PDB file :
Tito_2HPV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2HPV-query.scw
PDB file :
Tito_Scwrl_2HPV.pdb
: