Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVKDRQIQKTKVAIYNAFISLLQENDYSKITVQDVIGLANVGRSTFYSHYESKEVLLKELCEDLFHHLFKQGR-----DVTFEEYLVHILKH----FEQNQDSIATLL-L-SD-DPYFLLRFR---SELEHDVYPRLREEYI-T-K-VDIPEDFLKQFLLSSFIETLKWWLHQRQKMTVEDLLKYYLTMVER
1VI0 Chain:A ((8-189))
--------PKYMQIIDAAVEVIAENGYHQSQVSKIAKQAGVADGTIYLYFKNKEDILISLFKEKMGQFIERMEEDIKEKATAKEKLALVISKHFSLLAGDHNLAIVTQLELRQSNLELRQKINEILKGYLNILDGILTEGIQSGEIKEGLDVRLARQMIFGTIDETVTTWVMNDQKYDLVALSNSVLELLVS
General information:
TITO was launched using:
RESULT:
Template:
1VI0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -99420 for 1104 contacts (-90.1/contact) +
2D Compatibility (PS) -17469 + (NN) -10456 + (LL) 932
1D Compatibility (HY) -8400 + (ID) 1350
Total energy: -136163.0 ( -123.34 by residue)
QMean score : 0.472
(partial model without unconserved sides chains):
PDB file :
Tito_1VI0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VI0-query.scw
PDB file :
Tito_Scwrl_1VI0.pdb
: