Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRKKPIIIGVTGGSGGGKTSVSRAILSNFPDQKITMIEHDSYYKDQSHLTFEERVKTNYDHPLAFDTNLMIEQLNELIEGRPVDIPVYDYTKHTRSDRTIRQDPQDVIIVEGILVLEDQRLRDLMDIKLFVDTDDDIRIIRRIKRDMEERDRSLDSIIEQYTEVVKPMYHQFIEPTKRYADIVIPEGVSNIVAIDLINTKVASILNEAK
3W34 Chain:A ((4-206))
--PKPFVIGIAGGTASGKTTLAQALARTLGE-RVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQYLEQVKPMHLHFVEPTKRYADVIVPRGGQNPVALEMLAAKALARLARMG
General information:
TITO was launched using:
RESULT:
Template:
3W34.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -85488 for 1613 contacts (-53.0/contact) +
2D Compatibility (PS) -22188 + (NN) -9992 + (LL) 428
1D Compatibility (HY) -20800 + (ID) 4900
Total energy: -142940.0 ( -88.62 by residue)
QMean score : 0.538
(partial model without unconserved sides chains):
PDB file :
Tito_3W34.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3W34-query.scw
PDB file :
Tito_Scwrl_3W34.pdb
: