Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLLEERILKDGDVLGENILKVDSFLTHQVDFELMQEIGKVFADKYKEAGITKVVTIEASGIAPAVYAAQALGVPMIFAKKAKNITMTEGILTAEVYSFTK--QVTSQVSIVSRFLSNDDTVLIIDDFLANGQAAKGLLEIIGQAGAKVAGIGIVIEKSFQDGRDLLEKTGVPVTSLARIKAFENGRVVFAEADA
1Y0B Chain:A ((4-191))
MEALKRKIEEEGVVLSDQVLKVDSFLNHQIDPLLMQRIGDEFASRFAKDGITKIVTIESSGIAPAVMTGLKLGVPVVFARKHKSLTLTDNLLTA--SVYSFTKQTESQIAVSGTHLSDQDHVLIIDDFLANGQAAHGLVSIVKQAGASIAGIGIVIEKSFQPGRDELVKLGYRVESLARIQSLEEGKVSFVQE--
General information:
TITO was launched using:
RESULT:
Template:
1Y0B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -156792 for 1519 contacts (-103.2/contact) +
2D Compatibility (PS) -20441 + (NN) -5509 + (LL) 544
1D Compatibility (HY) -20000 + (ID) 5300
Total energy: -207498.0 ( -136.60 by residue)
QMean score : 0.670
(partial model without unconserved sides chains):
PDB file :
Tito_1Y0B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Y0B-query.scw
PDB file :
Tito_Scwrl_1Y0B.pdb
: