Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIMDKSIPKATAKRLSLYYRIFKRFNTDGIEKASSKQIADALGIDSATVRRDFSYFGELGRRGFGYDVKKLMNFFAEILNDHSTTNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTTEDGIPVYGISTIN--DHLIDSDIETAILTVPSTEAQEVADILVKAGIKGILSFSPVHLTLPKDIIVQYVDLTSELQTLLYFMNQQR
1XCB Chain:C ((3-198))
------VPEAAISRLITYLRILEELEAQGVHRTSSEQLGELAQVTAFQVRKDLSYFGSYGTRGVGYTVPVLKRELRHILGLNRKWGLCIVGMGRLGSALADYPGFGES-FELRGFFDVDPEK-VGRPVRGGV----IEHVDLLPQRVPGRIEIALLTVPREAAQKAADLLVAAGIKGILNFAPVVLEVPKEVAVENVDFLAGLTRLSFAILNPK
General information:
TITO was launched using:
RESULT:
Template:
1XCB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -141056 for 1400 contacts (-100.8/contact) +
2D Compatibility (PS) -21158 + (NN) -8900 + (LL) 792
1D Compatibility (HY) -19200 + (ID) 3600
Total energy: -193122.0 ( -137.94 by residue)
QMean score : 0.665
(partial model without unconserved sides chains):
PDB file :
Tito_1XCB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1XCB-query.scw
PDB file :
Tito_Scwrl_1XCB.pdb
: