Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTLLEKINETRDFLQAKGVTAPEFGLILGSGLGELAEEIENPIVVDYADIPNWGQSTVVGHAGKLVYGDLSGRKVLALQGRFHFYEGNTMEIVTFPVRIMRALACHSVLVTNAAGGI--GYGPGTLMLIKDHINV---IGTNPLIGENLEEFGPRFPDMSDAYTATYRQKAH----QIAEKQNIKLEEGVYLGVSGPTYETPAEIRAFQTMGAQAVGMSTVPEVIVAAHSGLKVLGISAITN---FAAGFQSELNHEEVVEVTQRIKEDFKGLVKSLVAEL
3FUC Chain:B ((8-282))
----EDYQDTAKWLLSHTEQRPQVAVICGSGLGGLVNKLTQAQTFDYSEIPNFP--------GRLVFGILNGRACVMMQGRFHMYEGYPFWKVTFPVRVFRLLGVETLVVTNAAGGLNPNFEVGDIMLIRDHINLPGFSGENPLRGPNEERFGVRFPAMSDAYDRDMRQKAHSTWKQMGEQR--ELQEGTYVMLGGPNFETVAECRLLRNLGADAVGMSTVPEVIVARHCGLRVFGFSLITNKVIMDYESQGKANHEEVLEAGKQAAQKLEQFVSLLMASI
General information:
TITO was launched using:
RESULT:
Template:
3FUC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -159484 for 2094 contacts (-76.2/contact) +
2D Compatibility (PS) -26802 + (NN) -3755 + (LL) 1280
1D Compatibility (HY) -26400 + (ID) 6150
Total energy: -221311.0 ( -105.69 by residue)
QMean score : 0.564
(partial model without unconserved sides chains):
PDB file :
Tito_3FUC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3FUC-query.scw
PDB file :
Tito_Scwrl_3FUC.pdb
: