Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSYFRNYWYRFGAILFIILAVILLVFRPDWSML--HYLLYFNFMALLAHQFEEYQFPGGASPIINYVVYDEEELMDRFPGNTQSIMLVNTIAWLLYIASIAFPQAYWLGLGVMFFSLT---QLLGHGFQMNIKLKTWYNPGLATTVFLLVPIACAYIYQASAEGMLTWGDWLGGFIMLIVCVLTSIIAPVQLLKDKKTNYIISPWQMDRFHKVINFVRIKK
1IXX Chain:B ((1-123))
------------------------DCPSDWSSYEGHCYKPFSEPKNWADAENFCTQQHAGGHLVSFQSSEEADFVVKLAFQTF------------------GHSIFWMGLSNV--WNQCNWQWS-NAAMLR--YKAW----------A-EESYCVYFKST--NN--KWRSRACRMMAQFVCEFQA------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1IXX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -121924 for 824 contacts (-148.0/contact) +
2D Compatibility (PS) -12963 + (NN) -743 + (LL) 10096
1D Compatibility (HY) -2800 + (ID) 950
Total energy: -129284.0 ( -156.90 by residue)
QMean score : -0.030
(partial model without unconserved sides chains):
PDB file :
Tito_1IXX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1IXX-query.scw
PDB file :
Tito_Scwrl_1IXX.pdb
: