Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEVIREQEFVNQYHYDARNLEWEEENGTPKTNFEVTFQLANRDEAAKVTSIVAVLQFVIVRDEFVISGVISQMAHIQGRLINEPSEFSQDEVENLAAPLLEIVKRLTYEVTEIALDRPGVTLEFNS
2VKC Chain:A ((1666-1770))
---------MKEANHLAAIEIFEKVNASLLPQNVLDLHGLHVDEALEHLMRVLEKKTEEFKQ----NGGKPYLSVITGRGNH-----SQGGVARIKPAVIKYLISHSFRFSE---IKPGCLKVMLK
General information:
TITO was launched using:
RESULT:
Template:
2VKC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -6147 for 774 contacts (-7.9/contact) +
2D Compatibility (PS) -11495 + (NN) -5992 + (LL) 2596
1D Compatibility (HY) 0 + (ID) 850
Total energy: -21888.0 ( -28.28 by residue)
QMean score : 0.317
(partial model without unconserved sides chains):
PDB file :
Tito_2VKC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VKC-query.scw
PDB file :
Tito_Scwrl_2VKC.pdb
: