Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIVVPVMPRSLEEAQE-IDLSKFDSVDIIEWRADALPKDDIINV-APAIFEKFAGHEIIFTLRTTREGGNIVLSDAEYVELIQKI-NSIYNPDYIDFEYFSHKEVFQEMLEFPNLVLSYHNFQETPENIMEIFSELTALAPRVVKIAVMPKNEQDVLDVMNYTRGFKTINPDQVYATVSMSKIGRISRFAGDVTGSSWTFAYLDSSIAPGQITISEMKRVKALLDAD
2OCZ Chain:A ((4-226))
MRIVAPVMPRHFDEAQAIDI-SKYEDVNLIEWRADFLPKDEIVAVAPAIFEK-FAGKEIIFTLRTVQEGGNITLSSQEYVDIIKEINAIY-NPDYIDFEYFTHKSVFQEMLDFPNLILSYHNFEETPENLMEAFSEMTKLAPRVVKIAVMPQSEQDVLDLMNYTRGFKTLNPEQEFATISMGKLGRLSRFAGDVIGSSWTYVSL------GQVTLNDMKRIIEVLE--
General information:
TITO was launched using:
RESULT:
Template:
2OCZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -127021 for 1723 contacts (-73.7/contact) +
2D Compatibility (PS) -23195 + (NN) -9081 + (LL) 476
1D Compatibility (HY) -28000 + (ID) 7250
Total energy: -194071.0 ( -112.64 by residue)
QMean score : 0.623
(partial model without unconserved sides chains):
PDB file :
Tito_2OCZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OCZ-query.scw
PDB file :
Tito_Scwrl_2OCZ.pdb
: