Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEPKYQRILIKLSGEALAGDKGVGIDIPTVQSIAKEIAEVHNSGVQIALVIGGGNLWRGEPAAEAGMDRVQADYTGMLGTVMNALVMADSLQQYGVDTRVQTAIPMQTVAEPYVRGRALRHLEKDRIVVFGAGIGSPYFSTDTTAALRAAEIEAEAILMAKNGVDGVYNADPKKDANAVKFDELTHVEVIKRGLKIMDATASTISMDNDIDLVVFNMNETGNIKRVVLGEQIGTTVSNKASE
2V4Y Chain:E ((6-240))
-KPVYKRILLKLSGEALQGTEGFGIDASILDRMAQEIKELVELGIQVGVVIGGGNLFRGAGLAKAGMNRVVGDHMGMLATVMNGLAMRDALHRAYVNARLMSAIPLNGVCDSYSWAEAISLLRNNRVVILSAGTGNPFFTTDSAACLRGIEIEANVVLKATK-VDGVFTADPA-DPTATMYEQLTYSEVLEKELKVMDLAAFTLARDHKLPIRVFNMNKPGALRRVVMGEKEGTLITE----
General information:
TITO was launched using:
RESULT:
Template:
2V4Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -175941 for 1972 contacts (-89.2/contact) +
2D Compatibility (PS) -25599 + (NN) -11233 + (LL) 200
1D Compatibility (HY) -22000 + (ID) 5500
Total energy: -240073.0 ( -121.74 by residue)
QMean score : 0.642
(partial model without unconserved sides chains):
PDB file :
Tito_2V4Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2V4Y-query.scw
PDB file :
Tito_Scwrl_2V4Y.pdb
: