Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MILREFCAENLTDLTRLDKAIISRVEL--CDNLAAGGTTPSYGVIKEANQYLHEKGISVAVMIRPRGGNFVYNDLELRIMEEDILRAVELESDALVLGILTSNNHIDTEAIEQLLPATQGLPLVFHMAFDVIPKSDQKKAIDQLVALGFTRILLHGSSNGEPIIENI----KHIKALVEYANNRIEIMVGGGVTAENYQYICQETGVRQAHGTRITQ
3JR2 Chain:A ((29-195))
------------------ASYVDVIEVGTILAFAE-----GMKAVSTLRHNH--PNHILVCDMKTTDGG-----------AILSRMAFEAGADWITVSAAAHIA-----TIAACKKVADELNGEIQIEIYGNW--TM-QDAKAWVDLGITQAIYHRSR--DAELAGIGWTTDDLDKMRQLSALGIELSITGGIVPEDIYLFEG-IKTKTFIAGRALA
General information:
TITO was launched using:
RESULT:
Template:
3JR2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -94151 for 1207 contacts (-78.0/contact) +
2D Compatibility (PS) -17033 + (NN) -4400 + (LL) 3004
1D Compatibility (HY) -6000 + (ID) 1050
Total energy: -119630.0 ( -99.11 by residue)
QMean score : 0.496
(partial model without unconserved sides chains):
PDB file :
Tito_3JR2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3JR2-query.scw
PDB file :
Tito_Scwrl_3JR2.pdb
: