Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEKDLLQLVVKAADEKRAEDIVILDLQPVTSVA--DYFVIMSASNSRQLEAIADNIREQVKGNGGDASHLEGDSKAGWVLLDLNSVVVHIFSEDERQHYNLEKLWHEAPLLDAEDFMTE
3RPF Chain:A ((60-118))
----TWFEKWHHKAKDL-GVVLKMAHSLGDVLIGQSSFLCVSMGKNRKNALELYENFIEDFKHNAPIWKYDLIHNKRIYAKERSHPLKGSGLL---------------------------
General information:
TITO was launched using:
RESULT:
Template:
3RPF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21090 for 318 contacts (-66.3/contact) +
2D Compatibility (PS) -6567 + (NN) -4544 + (LL) 1824
1D Compatibility (HY) -2000 + (ID) 300
Total energy: -32677.0 ( -102.76 by residue)
QMean score : 0.661
(partial model without unconserved sides chains):
PDB file :
Tito_3RPF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RPF-query.scw
PDB file :
Tito_Scwrl_3RPF.pdb
: