Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLKQAFIENDSIRLKLSASDWKEAIKLSIDPLIESGAVDAEYYDAIIESTEEFGPYYILMPGMAMPHAR---PEAGVKRDAFSLITLTEPVVF--PDGKEVSVLLALAATSSAIHTSVAI-PQIIALFELENSIQRLTECQEAKEVLAMVEESKNSPYLEGLDLES
1A3A Chain:A ((4-148))
---LF-KLGAENIFLGRKAATKEEAIRFAGEQLVKGGYVEP-EYVQAMLDREKLTPTYL-GESIAVPHG-TVEAKDRVLKTGVVFCQYPEGVRFGEEEDDIARLVIGIAARNN---EHIQVITSLTNALDDESVIERLAHTTSVDEVLELLAGRK------------
General information:
TITO was launched using:
RESULT:
Template:
1A3A.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -91486 for 1106 contacts (-82.7/contact) +
2D Compatibility (PS) -14893 + (NN) -2957 + (LL) 1524
1D Compatibility (HY) -8800 + (ID) 1500
Total energy: -118112.0 ( -106.79 by residue)
QMean score : 0.530
(partial model without unconserved sides chains):
PDB file :
Tito_1A3A.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1A3A-query.scw
PDB file :
Tito_Scwrl_1A3A.pdb
: