Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSGLFITFEGPEGAGKTTVLQEIKNILTAEGLQVMATREPGGIDIAEQIREVILNENNILMDPKTEALLYAAARRQHLVEKVKPALEQGFIVLCDRFIDSSLAYQGYARGLGIDEVLSINEFAIGDMMPHVTVYFSIDPEEGLKRIYANGSREKNRLDLEKLDFHTKVQEGYQELMKRFPERFHSVDAGQSKDLVVQDVLKVIDEALKKIQL
4QGA Chain:B ((4-205))
----FITFEGPEGSGKTTVINEVYHRLVKD-YDVIMTREPGGVPTGEEIRKIVLEGND--MDIRTEAMLFAASRREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKN-S------DQEDLKFHEKVIEGYQEIIHNESQRFKSVNADQPLENVVEDTYQTIIKYLEKI--
General information:
TITO was launched using:
RESULT:
Template:
4QGA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -102713 for 1558 contacts (-65.9/contact) +
2D Compatibility (PS) -21970 + (NN) -13435 + (LL) 980
1D Compatibility (HY) -20400 + (ID) 5350
Total energy: -162888.0 ( -104.55 by residue)
QMean score : 0.559
(partial model without unconserved sides chains):
PDB file :
Tito_4QGA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QGA-query.scw
PDB file :
Tito_Scwrl_4QGA.pdb
: