Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MILMIDNYDSFTYNLVQYLGELGEELVVKRNDSITIDEIEELSPDFLMISPGPCSPDEAGISLEAIKHFA-GKIPIFGVCLGHQSIAQVFGGDVVRAERLMHGKTSDIEHD-GKTIFEGLKN--------PLVATRYHSLIVKPETLPSCFTVTAQTKEGEIMAIRHNDLPIEGVQFHPESIMTSFGKEMLRNFIETYRKEVIA
1GPM Chain:A ((9-222))
RILILDFGSQYTQLVARRVRELGVYCELWAWDVT-EAQIRDFNPSGIILSGGPESTTEE-NSPRAPQYVFEAGVPVFGVCYGMQTMAMQLGGHVEASNEREFGYA-QVEVVNDSALVRGIEDALTADGKPLLDVWMSHGDKVT--AIPSDFITVASTESCPFAIMANEEKRFYGVQFHPEVTHTRQGMRMLERFVRD-------
General information:
TITO was launched using:
RESULT:
Template:
1GPM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -116513 for 1577 contacts (-73.9/contact) +
2D Compatibility (PS) -18994 + (NN) -3424 + (LL) 716
1D Compatibility (HY) -5600 + (ID) 2550
Total energy: -146365.0 ( -92.81 by residue)
QMean score : 0.516
(partial model without unconserved sides chains):
PDB file :
Tito_1GPM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GPM-query.scw
PDB file :
Tito_Scwrl_1GPM.pdb
: