Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPKVALYNQNGSTAGDIELNASVFGIEPNESVVFDAILMQRASLRQGTHKVKNRSEVRGGGRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAIKSVLSSKVIDNNIIVLEDLTLDTAKTKEMAAILKGLSVEK--KALIVTADANEAVALSARNIPGVTVVEANGINVLDVVNHEKLLITKAAVEKVEEVLA
5DM6 Chain:C ((3-198))
--QINVIGQNGGR--TIELPLP----EVNSGVLHEVVTWQLASRRRGTASTRTRAQVSKTGRKMYGQKGTGNARHGDRSVPTFVGGGVAFGPKPRSYDYTLPRQVRQLGLAMAIASRQEGGKLVAVDGFDIADAKTKNFISWAKQNGLDGTEKVLLVT--DDENTRRAARNVSWVSVLPVAGVNVYDILRHDRLVIDAAALEIVEE---
General information:
TITO was launched using:
RESULT:
Template:
5DM6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -53986 for 1332 contacts (-40.5/contact) +
2D Compatibility (PS) -21350 + (NN) -15936 + (LL) 976
1D Compatibility (HY) -12800 + (ID) 3750
Total energy: -106846.0 ( -80.21 by residue)
QMean score : 0.514
(partial model without unconserved sides chains):
PDB file :
Tito_5DM6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5DM6-query.scw
PDB file :
Tito_Scwrl_5DM6.pdb
: