Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKSRGLVRFFFSILAVGALITSIVGFALKWGEYRGLFLTFEAGQIFSVLFWFIGVGMIFSVISQMGFFVFLTVHRFALEILRSSSLWNLLQLFFILFVAFDLMYVRFLFFGESGESLAGYAWLPVFLLIFGVITAYIKQKQSSKKTFVSSLFLMVVITALEWFPALRVNDEDWLYLMLFPLMACNAFQLLMLPKFAAK
3K0D Chain:B ((58-94))
------------------------------------------GKIFTILYIFIGIGLVF------GF-----IHKLAVNVQLPSILSNLV------------------------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3K0D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -15323 for 149 contacts (-102.8/contact) +
2D Compatibility (PS) -3829 + (NN) -696 + (LL) 16300
1D Compatibility (HY) -7200 + (ID) 850
Total energy: -11598.0 ( -77.84 by residue)
QMean score : 0.078
(partial model without unconserved sides chains):
PDB file :
Tito_3K0D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3K0D-query.scw
PDB file :
Tito_Scwrl_3K0D.pdb
: