Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNVNQNKKVLFLTDIENGLEPILQEATNTSAENMLTIQSYGASISHPYGEIMRSVIFAIYQEDVEEIFVVGTKDKKTSAGNGLTQLETMKDKIQTLDYLFQNCKPEFLGGTVDEWLNENSSDTIEKSVDMIRHHPLVPSYVKVRGLFVNHKGGKPSIAEVPDVKTGQAMPDHCLS
4YF4 Chain:A ((33-171))
--MPPSKHIAIVACMDARLDVY--RMLGIKEGEAHVIRNAGCVVT---DDVIRSLAISQRLLGTREIILLHHTDCGMLTFTDD----DFKRAIQDETGI----RPTW---SPESY--PDAVEDVRQSLRRIEVNPFVTKHTSLRGFVFDVATGKLNEVT----------------
General information:
TITO was launched using:
RESULT:
Template:
4YF4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33183 for 1009 contacts (-32.9/contact) +
2D Compatibility (PS) -14846 + (NN) -6495 + (LL) 1644
1D Compatibility (HY) -6000 + (ID) 1050
Total energy: -59930.0 ( -59.40 by residue)
QMean score : 0.421
(partial model without unconserved sides chains):
PDB file :
Tito_4YF4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YF4-query.scw
PDB file :
Tito_Scwrl_4YF4.pdb
: