Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKSKGSIESEISKSITQWEKDYLGRGSVSVKTDILRDMIIVNLKG-------------------ILTPAEYVVCGSKEG------MLSIKQTRSELVESGIEGLKDIIL-----KITGEKVKSFHTDLSSR-TGERVMVFKLCNDLEKNLEKIL------
2YZJ Chain:A ((12-169))
-ILSHQSIKNLLGKVILNYSEENVRENGYDLR--ICGDKYYELVQGAELPEKKATLREIEFKERAILSANHTYLFESCEEFNMPADLAVLITLKSTLARNGFLAPPTVIDAGYKGKVNVAITAVYNSSLKKGMATHHLIFLKLDKPTERLYNGKYQGGILI
General information:
TITO was launched using:
RESULT:
Template:
2YZJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -10322 for 787 contacts (-13.1/contact) +
2D Compatibility (PS) -13189 + (NN) -670 + (LL) 184
1D Compatibility (HY) -8400 + (ID) 1050
Total energy: -33447.0 ( -42.50 by residue)
QMean score : 0.172
(partial model without unconserved sides chains):
PDB file :
Tito_2YZJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YZJ-query.scw
PDB file :
Tito_Scwrl_2YZJ.pdb
: