Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MVKKWLIQFAVMLSVLSTFTYSASAVGVTAITGNNSFDTAMPIGYWKYKNIDTTILEAGQDEAYFTFTANKGEKVYMRSTYQSAYTGMKIEIYDK-NRIPVSQGTEVINPNTFSSFIYANADAQNTTDTFYVKVSRGTYTGNMYFTLSIEDRIKSGSGTFQFSGVAENKGNTSLSPSGSDSSVIKVDLTNQSGIPRDAIVTRVQTTATQTPSQGNTRHLIMTSENNEWSRALVNSSTSGSYDISLSDQLSVAKVWSFKYNTLATARSTMSNVKAKIDYEYDVTKQF |
3SD2 Chain:A ((50-108)) | -----------------------------------------------------------------------SNILNVSFGRA--KDYAIITVTNKATGEIVHSKTYHN-TS----IVMIDM-SSCEKGEYTIHIILND---------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3SD2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -57 for 305 contacts (-0.2/contact) +
2D Compatibility (PS) -6216 + (NN) -2534 + (LL) 13140
1D Compatibility (HY) 0 + (ID) 200
Total energy: 4133.0 ( 13.55 by residue)
QMean score : 0.393
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