Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MANKELKRGLGARHIQMIALGGTIGVGLFMGSASTISWTGPSVLLAYAICGIFIFFIMRAMGEMLYVEPSTGSFATFGHQYIHPMAGYITAWSNWFQWI--IVGMSEIIAVGSYTKYWFPDLPAWIPGIVAMVILGAANLISVKSFGEFEFWFAMIKIVTIILMIIAGIGIIFFGFGNGGDAIGLSNLWSHGGFFAGGFSGFFFALSLVIAAYQGVELIGITAGEAKDPQNTLRNAIQSIIWRILIFYIGAIFVIVTVYPWDELNSLGSPFVSTFSKIGITAAAGIINFVVITAAMSGCNSGIFSAGRMLYTLGVNGQAPKFFKKISRNGVPLYGTIAVLIGLAVGVVLNYIAPPKIFVYVYSASVLPGMIPWFIILISHIGFRKAKGAALDKHPFKMPFAPFTNYLTIAFLLMVLVGMWFNDDTRISLIVGVIFLALVVISYYVFGIGKRTQANLTKSEQAAE |
4MUO Chain:A ((1-320)) | MDYRKIIKEIGRGK----------------NHARDLDRDTARGLYAHMLNGEVPDLELGGVLIALRIKGEG----------EAEMLGFYEAMQNHTIKLTPPAGKPMPIVIPSYN--------------------GARKQAN---------------LTPLLAILLHKLGFPVVVHGVSEDPTR-------------------------VLTETIFELMGITPTLHGGQAQAKLDEHQPVFMP--------------------VGAFCPPLEKQLAM---RWRMGVRNSAHTLAKLAT----PFAEGEALRLSSVSH--PEYIGRVAKFFSDIGGRALLMHGTEGEVYAN-----------------PQRCP-QINLIDREGMRVLYE--------KQAKDPETTAQWIERCL--------AGSEPIPESLKIQMACCLVAT----GEAATISDGLARVNQAF- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4MUO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -311260 for 2656 contacts (-117.2/contact) +
2D Compatibility (PS) -32055 + (NN) -3206 + (LL) 12640
1D Compatibility (HY) -4400 + (ID) 2850
Total energy: -341131.0 ( -128.44 by residue)
QMean score : 0.215
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