Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMLMNEFEKACETLRKFMAYMLEK-DMKSWTELWDENAVFEFPYAPEGSPKRIEGKAAIYDYIKDYPKQIHLSSFTAPTVYRSADSNTVIAEFQCDGHVIETGLPYRQSYISVIETRDGRIVRYRDYWNPLVVKEAFGGSFLQTEESGK
4J9A Chain:D ((1-125))--MNAKEIVVHALR-----LLENGDARGWSDLFHPEGVLEYPYPPPGYKTRFEGRETIWAHMRLFPEYMTIR-FTDVQFYETADPDLAIGEFHGDGVLTA-GGKLAYDYIAVWRTRDGQILLYRLFFNPLRVL---------------


General information:
TITO was launched using:
RESULT:

Template: 4J9A.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain D - contact count / total energy / energy per contact / energy per residue : 529 -57246 -108.21 -465.41
target 2D structure prediction score : 0.57
Monomeric hydrophicity matching model chain D : 0.75

3D Compatibility (PKB) : -108.21
2D Compatibility (Sec. Struct. Predict.) : 0.57
1D Compatibility (Hydrophobicity) : 0.75
QMean score : 0.515

(partial model without unconserved sides chains):
PDB file : Tito_4J9A.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4J9A-query.scw
PDB file : Tito_Scwrl_4J9A.pdb: