Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence-------------------------MNRDQEKIQIENEMNAMHGTIKEDILK----DFEEFKGYLKKQVNRGKKLGLDDGKLVKSAAILGDYLAKHEEPQNGEEMLLQELWSVA---------DEDEKEHLAQLLVKLVDKQ-------
1DVK Chain:A ((79-247))MRIQEAIAQDKTISVIIDPSQIGSTEGKPLLSMKCNLYIHEILSRWKASLEAYHPELFLDTKKALFPLLLQLRRNQLAPDLLISLATVLYHLQQPKEINLAVQSYMKLSIGNVAWPIGVANIMIDERTRLWITSIKRLITFEEWYTSNH


General information:
TITO was launched using:
RESULT:

Template: 1DVK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 356 -32755 -92.01 -314.95
target 2D structure prediction score : 0.67
Monomeric hydrophicity matching model chain A : 0.57

3D Compatibility (PKB) : -92.01
2D Compatibility (Sec. Struct. Predict.) : 0.67
1D Compatibility (Hydrophobicity) : 0.57
QMean score : 0.454

(partial model without unconserved sides chains):
PDB file : Tito_1DVK.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1DVK-query.scw
PDB file : Tito_Scwrl_1DVK.pdb: