Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKKSGKWFSLAAALSVTAIVGAGCSMSNGDAQKDTKTTAETKQTEQKTADSKKSNTQNSEFSLESQYFNDIKKVDGLETIQNPENILALVNKQYALPGNYEPSDLVIPDVEFSFEEKIQKRYIRKEAADALKTMFDAAKKEGYELA-AVSGYRSYDRQKVIFDNEVSLKGERKAKEAVAYPGESEHQTGLAMDISSRSNGFELNEAFGSTADGKWVQDNAYKYGFIIRYPKNKEDITKYEYEPWHLRYVGKKAAKVIQDNDLTLEEYFEKVKKI
4NT9 Chain:A ((46-210))------------------------------------------------------------------------------SIQGKYDEIIVANKHYPLSKDYNPGENPTAKAE-------------------LVKLIKAMQEAGFPISDHYSGFRSYETQTKLYQDYVNQDGKAAADRYSARPGYSEHQTGLAFDVIGTDGDLVTEEKAA-----QWLLDHAADYGFVVRYLKGKEKETGYMAEEWHLRYVGKE-AKEIAASGLSLEEYY------


General information:
TITO was launched using:
RESULT:

Template: 4NT9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 758 5620 7.41 34.27
target 2D structure prediction score : 0.53
Monomeric hydrophicity matching model chain A : 0.72

3D Compatibility (PKB) : 7.41
2D Compatibility (Sec. Struct. Predict.) : 0.53
1D Compatibility (Hydrophobicity) : 0.72
QMean score : 0.428

(partial model without unconserved sides chains):
PDB file : Tito_4NT9.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4NT9-query.scw
PDB file : Tito_Scwrl_4NT9.pdb: