Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKPLLKENSLIQVKHILKAHQNVKDVVIHTPLQRNDRLSERYECNIYLKREDLQVVRSFKLRGAYHKMKQLSSEQTENGVVCASAGNHAQGVAFSCKHLGIHGKIFMPSTTPRQKVSQVELFGKGFIDIILTGDTFDDVYKSAAECCEAESRTFIHPFDDPDVMAGQGTLAVEILNDIDTEPHFLFASVGGGGLLSGVGTYLKNVSPDTKVIAVEPAGAASYFESNKAGHVVTLDKIDKFVDGAAVKKIGEETFRTLETVVDDILLVPEGKVCTSILELYNECAVVAEPAGALSVAALDLYKDQ----I-KGKNVVCVVSGGNNDIGRMQEMKERSLIFEGLQHYFIVNFPQRAGALREFLDEVLGPNDDITRFEYTKKNNKSNGPALVGIELQNKADYGPLIERMNKKPFHYVEVNKDEDLFHLLI
5CVC Chain:A ((16-338))--------YAADIDSIREAQARIAPYVHRTPVMSSTSIDAMVGKKLFFKCECFQKAGAFKIRGASNSIFALDDEQVSKGVVTHSSGNHAAAVALAAKLRGIPAHIVIPRNAPASKVENVKCYGG---HIIWSDASIESREYVSKRVQEETGAVLIHPINSKYTISGQGTVSLELLEQVP-EIDTIIVPISGGGLISGVALAAKAINPSIRILAAEPKGADDSAQSKAAGKIITLPSTNTIADGLRAF-LGDLTWPVVRDLVDDVIVVDDTAIVDAMKMCYEILKVAVEPSGAIGLAAALSDEFKQSSAWHESSKIGIIVSGGNVDLGTLWQSMYKH-------------------------------------------------------------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 5CVC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 2093 -128544 -61.42 -404.23
target 2D structure prediction score : 0.59
Monomeric hydrophicity matching model chain A : 0.71

3D Compatibility (PKB) : -61.42
2D Compatibility (Sec. Struct. Predict.) : 0.59
1D Compatibility (Hydrophobicity) : 0.71
QMean score : 0.431

(partial model without unconserved sides chains):
PDB file : Tito_5CVC.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5CVC-query.scw
PDB file : Tito_Scwrl_5CVC.pdb: