Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPKSKVRKKNDFTVSAVSRTPMKVKVGPSSVWFVSLFIGLMLIGLIWLMVFQLAAIGSQAPTALNWMAQLGPWNYAIAFAFMITGLLLTMRWH
2W8X Chain:A ((1-72))
FNCNKREGPCSQRSLCECDPNLQLGRHSDQLWHYNLRTNRCERG----------------GYRDNCNSHSSSGACVMACE-----RIHHHHHH
General information:
TITO was launched using:
RESULT:
Template:
2W8X.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37524 for 518 contacts (-72.4/contact) +
2D Compatibility (PS) -7173 + (NN) 1880 + (LL) 2520
1D Compatibility (HY) 2400 + (ID) 350
Total energy: -38247.0 ( -73.84 by residue)
QMean score : 0.176
(partial model without unconserved sides chains):
PDB file :
Tito_2W8X.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2W8X-query.scw
PDB file :
Tito_Scwrl_2W8X.pdb
: