Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVAPHEDPEDHVAPAAQRVRAGTLLLANTDLLEPTFRRSVIYIVEHNDGGTLGVVLNRPSETAVYNVLPQWAKL------AAKPKTMFIGGPVKRDAALCLAVLRVGADPEGVPGLRHVAGRLVM-VDLDADPEVLA--AAVEGVRIYAGYSGWTIGQLEGEIERDDWIVLSALPSDVLVGPRADLWGQVLRRQPLPLSLLATHPIDLSRN
2DO8 Chain:A ((2-180))
----------------FGNLQGKFIIATPEMDDEYFDRTVIYICEHNDNGTIGVIINTPTDLSVLELLTRMDFQMAKPRIYTQDQMVLNGGPVNQDRGFIVHSKTD---HE-FTHSYKVTDDITLTTSGD-VLDSFGTQTAPEKFIVCLGCSTWKPHQLEQEIAQNYWLLSEANNQTLFETSYLDRWVEANEMLGISGIL-----------
General information:
TITO was launched using:
RESULT:
Template:
2DO8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -97151 for 1195 contacts (-81.3/contact) +
2D Compatibility (PS) -17554 + (NN) -650 + (LL) 1332
1D Compatibility (HY) -9600 + (ID) 2150
Total energy: -125773.0 ( -105.25 by residue)
QMean score : 0.285
(partial model without unconserved sides chains):
PDB file :
Tito_2DO8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DO8-query.scw
PDB file :
Tito_Scwrl_2DO8.pdb
: