Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSARC----QITGRTVGFGKAVS--HSHRRTRRRWPPNIQLKAYYLPSEDRRIKVRVSAQGIKVIDRDGHRGRRRAARAGSAPAHFARQ--AGSSLRTAAIL-----------
4AKA Chain:A ((19-124))
GADSCKYCLQLYDETYERGSYIEVYKSVGSLSPPWTPGSVCVPFVNDTKRERPYWYLFDNV-------NYTGRITGLGHGTCIDDFTKSGFKGISSIKRCIQTKDGKVECINQ
General information:
TITO was launched using:
RESULT:
Template:
4AKA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 14002 for 573 contacts (24.4/contact) +
2D Compatibility (PS) -9125 + (NN) -3702 + (LL) 612
1D Compatibility (HY) -2000 + (ID) 750
Total energy: -963.0 ( -1.68 by residue)
QMean score : 0.239
(partial model without unconserved sides chains):
PDB file :
Tito_4AKA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4AKA-query.scw
PDB file :
Tito_Scwrl_4AKA.pdb
: