Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRTFESVADLAAAAGEKVGQSDWVTITQEEVNLFADATGDHQWIHVDPERAAAGPFGTTIAHGFMTLALLPRLQHQMYTVKGVKLAINYGLNKVRFPAPVPVGSRVRATSSLVGVEDLGNGTVQATVSTTVEVEGSAKPACVAESIVRYVA
4W78 Chain:B ((1-124))
--------MTV--VGAVLP-ELKLYGDPTFIVSTALATRDFQDVHHDRDKAVAQGSKDIFVNILTDTGLVQRYVTDW--A-G--PSALIKSIGLRLGVPWYAYDTVTFSGEVTAVND-----GLITVKVVGRNTLG-DHV-TATVEL----
General information:
TITO was launched using:
RESULT:
Template:
4W78.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -51447 for 904 contacts (-56.9/contact) +
2D Compatibility (PS) -13706 + (NN) -5496 + (LL) 2308
1D Compatibility (HY) 800 + (ID) 1050
Total energy: -68591.0 ( -75.88 by residue)
QMean score : 0.405
(partial model without unconserved sides chains):
PDB file :
Tito_4W78.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4W78-query.scw
PDB file :
Tito_Scwrl_4W78.pdb
: