Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTGISRRTFGLAAGFGAIGAGGLGGGCSTRSGPTPTPEPASRGVGVVLSHEQ-------FRTDRLVAHAQAAEQAGFRYVWASDHLQPWQDNEGHSMFPWLTLALVGNSTSSILFGTGVTCPIYRYHPATVAQAFASLAILNPGRVFLGLGTGERLNEQAATDTFGN----YRERHDRLIEAIVLIRQLWSGERISFTGHYFRTDELK---------LYDTPAM--PPPIFVAASG--PQSATLAGRYGDGWIAQARDIN-DAKLLAAFAAGAQAAGRDPTTLGKRAELFAVVGDDKAAARAADLWRFTAGAV-----D---QPNPV-EIQRA-A---ESNPIEKVLANWAVGTDPGVHIGAVQAVLDA--GAVPFLHFPQ------DDPITAIDFYRTNVLPELR |
| 4UWM Chain:A ((2-374)) | ----------------------------------------AMETGLIFHPYMRPGRSARQTFDWGIKSAVQADSVGIDSMMISEHASQIW---ENIPNPELLIAAAALQTKNIKFAPMAHLLPH-QHPAKLATMIGWLSQILEGRYFLGIGAGAYPQASY---MHGIRNAGTKNLNDMVRESLFIMEKIWKREPFFHEGKYWDAGYPEELEDEQHKLADFSPWGGKAPEIAVTGFSYNSPSMRLAGERNFKPVSIFSGLDALKRHWEVYSEAAIEAGHTPDRSRHAVSHTVFCADTDKEAKRLVMEGPIGYCFERYLIPIWRRFGMMDGYAKDAGIDPVDADLEFLVDNVFLVGSPDTVTEKINALFEATGGWGTLQVEAHDYYDDPAPWFQSLELISKEVAPKIL |
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General information:
TITO was launched using:
| RESULT:
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Template: 4UWM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -121383 for 2571 contacts (-47.2/contact) +
2D Compatibility (PS) -34440 + (NN) -19012 + (LL) 304
1D Compatibility (HY) -7600 + (ID) 2700
Total energy: -184831.0 ( -71.89 by residue)
QMean score : 0.451
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