Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTPQARPARRADVRELSRTMARAFYDDPVMSWLLSNDNARTARLTRLFATIVRHQHLAGGGVEVARGAAGIGGAALWDPPDRWRESRRQQLAMTPGFLRVFGFRTAKARAALDVMMRVHPEEPHWYLAAIGSDPTVRGQGFGQVLMRSRLDRCDAE-HCPAYLESTKPENVPYYQRFGFRVTREIALPDAGPPLWAMWREPR
1CJW Chain:A ((4-164))
PANEFRCLTPEDAAGVFEIEREAFISVSGNC---PL---NLDEVQHFLT----L---CPELSLGWFVEGRLVAFIIGSLWDEERLTQ--------ES-----------------LALHRPRGHSAHLHALAVHRSFRQQGKGSVLLWRYLHHVGAQPAVRRAVLMCEDALVPFYQRFGFHPAGPCAIVVGSLTFTEMHC---
General information:
TITO was launched using:
RESULT:
Template:
1CJW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45846 for 1246 contacts (-36.8/contact) +
2D Compatibility (PS) -16690 + (NN) -6163 + (LL) 3972
1D Compatibility (HY) -3600 + (ID) 1350
Total energy: -69677.0 ( -55.92 by residue)
QMean score : 0.355
(partial model without unconserved sides chains):
PDB file :
Tito_1CJW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1CJW-query.scw
PDB file :
Tito_Scwrl_1CJW.pdb
: